genomics visium hd assay Search Results


visium hd data  (10X Genomics)
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10X Genomics visium hd data
a, Hematoxylin and eosin (H&E) staining of breast cancer Patient 2. b-d, spatial maps of <t>Visium</t> <t>HD</t> cells coloured by cell type ( b ), mapped cancer cell state ( c ), and CNV cluster ( d ). e, Heatmap of CNV scores in malignant cells with red and blue indicating gains and losses respectively. Leiden clusters of CNV profiles are shown on the y-axis. f-g, Mean per-gene CNV values along chromosome 11 ( f ) and chromosome 8 ( g ) for each CNV cluster (0 or 1).
Visium Hd Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genomics+visium+hd+assay/hd+visium/bio_rxiv__64898__2026__01__06__693992-290-0-9
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visium hd data - by Bioz Stars, 2026-09
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a, Hematoxylin and eosin (H&E) staining of breast cancer Patient 2. b-d, spatial maps of Visium HD cells coloured by cell type ( b ), mapped cancer cell state ( c ), and CNV cluster ( d ). e, Heatmap of CNV scores in malignant cells with red and blue indicating gains and losses respectively. Leiden clusters of CNV profiles are shown on the y-axis. f-g, Mean per-gene CNV values along chromosome 11 ( f ) and chromosome 8 ( g ) for each CNV cluster (0 or 1).

Journal: bioRxiv

Article Title: A Pan-Cancer Single-Cell Compendium of Intratumoural Heterogeneity

doi: 10.64898/2026.01.06.693992

Figure Lengend Snippet: a, Hematoxylin and eosin (H&E) staining of breast cancer Patient 2. b-d, spatial maps of Visium HD cells coloured by cell type ( b ), mapped cancer cell state ( c ), and CNV cluster ( d ). e, Heatmap of CNV scores in malignant cells with red and blue indicating gains and losses respectively. Leiden clusters of CNV profiles are shown on the y-axis. f-g, Mean per-gene CNV values along chromosome 11 ( f ) and chromosome 8 ( g ) for each CNV cluster (0 or 1).

Article Snippet: Visium HD data and images were directly downloaded from 10X Genomics’ datasets pages – : https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-human-lung-cancer-post-xenium-expt , https://www.10xgenomics.com/products/visium-hd-spatial-gene-expression/dataset-human-crc , https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-human-breast-cancer-fixed-frozen , https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-human-breast-cancer-ff-ultima .

Techniques: Staining